{"id":19,"date":"2026-08-20T16:30:13","date_gmt":"2026-08-20T08:30:13","guid":{"rendered":"https:\/\/www.shangtongtech.com\/index.php\/products\/neuroscience-instruments\/brainscan\/"},"modified":"2026-08-20T18:26:40","modified_gmt":"2026-08-20T10:26:40","slug":"brainscan","status":"publish","type":"page","link":"https:\/\/www.shangtongtech.com\/index.php\/products\/neuroscience-instruments\/brainscan\/","title":{"rendered":"BrainScan Brain Slice Analyzer"},"content":{"rendered":"\n\n<h1 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow\" style=\"text-align:center\">BrainScan<\/h1>\n\n\n<h2 class=\"wp-block-heading\" style=\"text-align:center\">Brain Slice Analyzer<\/h2>\n\n\n<p class=\"wp-block-paragraph\" style=\"text-align:center\">Simplify your neuroscience workflow. BrainScan rapidly scans brain slices to produce high-resolution digital panoramic images, and automatically performs brain region segmentation, atlas registration, and cell counting for quantitative analysis \u2014 full automation from imaging to data processing.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\" style=\"text-align:center\"><\/p>\n\n\n\n\n<a class=\"wp-block-button__link wp-element-button is-layout-flex wp-block-buttons-is-layout-flex\" href=\"https:\/\/www.shangtongtech.com\/index.php\/contact\/\">Request a Demo<\/a>\n\n\n\n\n\n\n\n<figure class=\"wp-block-image size-large is-layout-flow wp-block-group-is-layout-flow\"><img loading=\"lazy\" decoding=\"async\" width=\"1400\" height=\"1400\" src=\"https:\/\/www.shangtongtech.com\/wp-content\/uploads\/2026\/08\/prod_dev_black.jpg\" alt=\"BrainScan brain slice analyzer\" class=\"wp-image-46\" srcset=\"https:\/\/www.shangtongtech.com\/wp-content\/uploads\/2026\/08\/prod_dev_black.jpg 1400w, https:\/\/www.shangtongtech.com\/wp-content\/uploads\/2026\/08\/prod_dev_black-300x300.jpg 300w, https:\/\/www.shangtongtech.com\/wp-content\/uploads\/2026\/08\/prod_dev_black-1024x1024.jpg 1024w, https:\/\/www.shangtongtech.com\/wp-content\/uploads\/2026\/08\/prod_dev_black-150x150.jpg 150w, https:\/\/www.shangtongtech.com\/wp-content\/uploads\/2026\/08\/prod_dev_black-768x768.jpg 768w\" sizes=\"auto, (max-width: 1400px) 100vw, 1400px\" \/><\/figure>\n\n\n\n\n\n<h2 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow\">Key Features<\/h2>\n\n\n\n\n\n<h3 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow wp-block-column-is-layout-flow is-layout-flex wp-container-core-columns-is-layout-794e3cfa wp-block-columns-is-layout-flex\">One-Click Atlas Registration<\/h3>\n\n\n<p class=\"wp-block-paragraph\">Automatically identifies brain slices and matches them with the Allen Brain Atlas. Supports rat, mouse, macaque and ferret brain atlases.<\/p>\n\n\n\n\n\n\n\n\n<h3 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow wp-block-column-is-layout-flow\">Cell Recognition &#038; Counting<\/h3>\n\n\n<p class=\"wp-block-paragraph\">Automatic quantitative analysis that reduces manual intervention, ensuring consistent and accurate experimental results.<\/p>\n\n\n\n\n\n\n\n\n<h3 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow wp-block-column-is-layout-flow\">Intelligent Scan Path<\/h3>\n\n\n<p class=\"wp-block-paragraph\">Automatically identifies ROIs and plans the scanning path \u2014 a single brain slice is imaged in under 1 minute (10X, DAPI &#038; GFP, ~40 s).<\/p>\n\n\n\n\n\n\n\n\n<h3 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow wp-block-column-is-layout-flow\">High-Precision Auto-Focus<\/h3>\n\n\n<p class=\"wp-block-paragraph\">Precise focusing on thick brain slice surfaces to quickly capture clear images, keeping all channels on the same focal plane.<\/p>\n\n\n\n\n\n\n\n\n\n\n\n<h2 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow\">One-Click Brain Atlas Registration<\/h2>\n\n\n<p class=\"wp-block-paragraph\">Standard atlas comparison for efficient brain exploration. Register slices automatically and skip the tedious manual work.<\/p>\n\n\n\n\n\n<h3 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow wp-block-column-is-layout-flow is-layout-flex wp-container-core-columns-is-layout-794e3cfa wp-block-columns-is-layout-flex\">Comprehensive Registration<\/h3>\n\n\n<p class=\"wp-block-paragraph\">Handles tilted slices, incomplete slices and half-brain slices with robust algorithms.<\/p>\n\n\n<ul class=\"wp-block-list\"><li>Tilted brain slice registration<\/li><li>Incomplete brain slice registration<\/li><li>Half-brain registration<\/li><\/ul>\n\n\n\n\n\n\n\n\n<h3 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow wp-block-column-is-layout-flow\">Precise Manual Positioning<\/h3>\n\n\n<p class=\"wp-block-paragraph\">Side-by-side standard 2D atlas comparison and Bregma positioning for accurate localization.<\/p>\n\n\n\n\n\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"1600\" height=\"1076\" src=\"https:\/\/www.shangtongtech.com\/wp-content\/uploads\/2026\/08\/atlas.png\" alt=\"Allen brain atlas registration\" class=\"wp-image-21\" srcset=\"https:\/\/www.shangtongtech.com\/wp-content\/uploads\/2026\/08\/atlas.png 1600w, https:\/\/www.shangtongtech.com\/wp-content\/uploads\/2026\/08\/atlas-300x202.png 300w, https:\/\/www.shangtongtech.com\/wp-content\/uploads\/2026\/08\/atlas-1024x689.png 1024w, https:\/\/www.shangtongtech.com\/wp-content\/uploads\/2026\/08\/atlas-768x516.png 768w, https:\/\/www.shangtongtech.com\/wp-content\/uploads\/2026\/08\/atlas-1536x1033.png 1536w\" sizes=\"auto, (max-width: 1600px) 100vw, 1600px\" \/><figcaption class=\"wp-element-caption\">One-click atlas registration with the Allen Brain Atlas<\/figcaption><\/figure>\n\n\n\n\n\n<h2 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow\">Automatic Fluorescence Quantitation<\/h2>\n\n\n<p class=\"wp-block-paragraph\">Automatically recognize and quantify signals such as DAPI, c-Fos, neurons and glial cells, with statistics on positive-signal count, area and fluorescence intensity.<\/p>\n\n\n\n\n\n<h3 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow wp-block-column-is-layout-flow is-layout-flex wp-container-core-columns-is-layout-794e3cfa wp-block-columns-is-layout-flex\">Custom Statistical Regions<\/h3>\n\n\n<p class=\"wp-block-paragraph\">Supports whole-brain, left\/right brain and custom brain region statistics to meet diverse counting needs.<\/p>\n\n\n\n\n\n\n\n\n<h3 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow wp-block-column-is-layout-flow\">Graded Counting Results<\/h3>\n\n\n<p class=\"wp-block-paragraph\">Counting results are presented in a graded Excel layout with precise correlation between parent and sub brain regions.<\/p>\n\n\n\n\n\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"1600\" height=\"1226\" src=\"https:\/\/www.shangtongtech.com\/wp-content\/uploads\/2026\/08\/counting.png\" alt=\"Automatic cell counting\" class=\"wp-image-22\" srcset=\"https:\/\/www.shangtongtech.com\/wp-content\/uploads\/2026\/08\/counting.png 1600w, https:\/\/www.shangtongtech.com\/wp-content\/uploads\/2026\/08\/counting-300x230.png 300w, https:\/\/www.shangtongtech.com\/wp-content\/uploads\/2026\/08\/counting-1024x785.png 1024w, https:\/\/www.shangtongtech.com\/wp-content\/uploads\/2026\/08\/counting-768x588.png 768w, https:\/\/www.shangtongtech.com\/wp-content\/uploads\/2026\/08\/counting-1536x1177.png 1536w\" sizes=\"auto, (max-width: 1600px) 100vw, 1600px\" \/><figcaption class=\"wp-element-caption\">Automatic cell recognition and quantitative counting<\/figcaption><\/figure>\n\n\n\n\n\n<h2 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow\">High-Performance Slice Scanner<\/h2>\n\n\n\n\n\n<h3 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow wp-block-column-is-layout-flow is-layout-flex wp-container-core-columns-is-layout-794e3cfa wp-block-columns-is-layout-flex\">One Image Per Minute<\/h3>\n\n\n<p class=\"wp-block-paragraph\">Automatically recognizes ROIs and plans the scan path \u2014 a single slice in under 1 minute.<\/p>\n\n\n\n\n\n\n\n\n<h3 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow wp-block-column-is-layout-flow\">99% Uniformity<\/h3>\n\n\n<p class=\"wp-block-paragraph\">Uniform illumination combined with global fluorescence background correction achieves up to 99% fluorescence background uniformity.<\/p>\n\n\n\n\n\n\n\n\n<h3 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow wp-block-column-is-layout-flow\">No Crosstalk<\/h3>\n\n\n<p class=\"wp-block-paragraph\">Universal fluorescence channel configurations cover diverse applications, with highly customizable narrow-band excitation and emission filters.<\/p>\n\n\n\n\n\n\n\n\n<h3 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow wp-block-column-is-layout-flow\">Low Phototoxicity<\/h3>\n\n\n<p class=\"wp-block-paragraph\">Strobe mode provides millisecond high instantaneous power only during camera exposure, reducing phototoxicity to samples.<\/p>\n\n\n\n\n\n\n\n\n\n\n\n<h2 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow\">Simplify More Than You Think<\/h2>\n\n\n\n\n\n<h3 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow wp-block-column-is-layout-flow is-layout-flex wp-container-core-columns-is-layout-794e3cfa wp-block-columns-is-layout-flex\">Side LED Illumination<\/h3>\n\n\n<p class=\"wp-block-paragraph\">Side LED diffuse illumination delivers high-contrast fluorescence samples without the need to pre-mark the slide.<\/p>\n\n\n\n\n\n\n\n\n<h3 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow wp-block-column-is-layout-flow\">Progress Indicator<\/h3>\n\n\n<p class=\"wp-block-paragraph\">A ring light on the unit displays scanning status and progress via color.<\/p>\n\n\n\n\n\n\n\n\n<h3 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow wp-block-column-is-layout-flow\">Parameter Templates<\/h3>\n\n\n<p class=\"wp-block-paragraph\">Scan parameters, contrast, analysis regions and export size can be saved as reusable templates.<\/p>\n\n\n\n\n\n\n\n\n<h3 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow wp-block-column-is-layout-flow\">Batch Export<\/h3>\n\n\n<p class=\"wp-block-paragraph\">Export single-channel pseudo-color\/gray images or multi-channel overlays in batches, with multi-label export support.<\/p>\n\n\n\n\n\n\n\n\n\n\n\n<h2 class=\"wp-block-heading is-layout-flow wp-block-group-is-layout-flow\" style=\"text-align:center\">Bring BrainScan into Your Laboratory<\/h2>\n\n\n<p class=\"wp-block-paragraph\" style=\"text-align:center\">Put brain slice scanning, atlas registration and quantitative analysis into a more efficient automated workflow.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\" style=\"text-align:center\"><\/p>\n\n\n\n\n<a class=\"wp-block-button__link wp-element-button is-layout-flex wp-block-buttons-is-layout-flex\" href=\"https:\/\/www.shangtongtech.com\/index.php\/contact\/\">Request a Demo<\/a>\n\n\n\n\n\n","protected":false},"excerpt":{"rendered":"<p>BrainScan Brain Slice Analyzer Simplify your neuroscien [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":20,"parent":18,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"page-no-title","meta":{"footnotes":""},"class_list":["post-19","page","type-page","status-publish","has-post-thumbnail","hentry"],"_links":{"self":[{"href":"https:\/\/www.shangtongtech.com\/index.php\/wp-json\/wp\/v2\/pages\/19","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.shangtongtech.com\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.shangtongtech.com\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.shangtongtech.com\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.shangtongtech.com\/index.php\/wp-json\/wp\/v2\/comments?post=19"}],"version-history":[{"count":3,"href":"https:\/\/www.shangtongtech.com\/index.php\/wp-json\/wp\/v2\/pages\/19\/revisions"}],"predecessor-version":[{"id":47,"href":"https:\/\/www.shangtongtech.com\/index.php\/wp-json\/wp\/v2\/pages\/19\/revisions\/47"}],"up":[{"embeddable":true,"href":"https:\/\/www.shangtongtech.com\/index.php\/wp-json\/wp\/v2\/pages\/18"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.shangtongtech.com\/index.php\/wp-json\/wp\/v2\/media\/20"}],"wp:attachment":[{"href":"https:\/\/www.shangtongtech.com\/index.php\/wp-json\/wp\/v2\/media?parent=19"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}